Zaidan, Nur Zafirah, Walker, K.J., Brown, J, Schaffer, L. V. , Scalf, M., Shortreed, M, Iyer, G., Smith,L.M.,  Sridharan, R. (2018) Compartmentalization of HP1 Proteins in Pluripotency Acquisition and Maintenance  Stem Cell Reports


Jackson, S.A. *, Olufs, Z.P.G. *, Tran, K.A., Zaidan, N.Z., and Sridharan, R. (2016) Alternative routes to induced pluripotent stem cells revealed by reprogramming of neural lineage.  Stem Cell Reports 6(3): 302-11* co-first authors.


Roy, S. *, Siahpirani, A.F., Knaack, S., Stewart, R., Wilson, M., Sridharan, R. (2015) Predictive framework for cell-line specific enhancer-promoter interactions defines signatures of long and short range regulation. – Nucleic Acids Research 43 (18): 8694-8712. * corresponding author.

Tran, K.A., Jackson, S.A., Olufs, Z.P.G., Zaidan, N.Z., Leng, N., Kendziorski, C., Roy, S., and Sridharan, R. (2015) Collaborative rewiring of the pluripotency network by chromatin and signaling modulating pathways. Nat. Commun. 6:6188 doi: 10.1038/ncomms7188


Sridharan, R., Gonzales-Cope, M., Chronis, C.,Bonora, G., McKee, R., Patel,S.,Lopez,D., Mishra, N.,Pellegrini, M., Carey, M., Garcia, B.A. and Plath, K. (2013) Proteomic and genomic approaches reveal critical functions of H3K9 methylation and Heterochromatin Protein-1γ in reprogramming to pluripotency. Nat. Cell. Bio. 15(7), 872-82.

Britton, L.M., Newhart, A., Bhanu, N.V., Sridharan, R., Gonzales-Cope, M., Plath, K., Janicki, S.M. and Garcia, B.A.(2013) Initial characterization of histone H3 serine 10 O-acetylation. Epigenetics 8 (10) 1101-13.

Jackson, S.A. and Sridharan, R. (2013) The nexus of Tet1 and the pluripotency network. Cell Stem Cell 12, 387-88.

Jackson, S.A. and Sridharan, R.  (2013) Peering into the black box of reprogramming to the pluripotent state. Curr Pathobiol Rep 1, 129-136.


Sridharan, R. and Plath, K. (2011) Small RNAs loom large during reprogramming. Cell Stem Cell, 8, 599-601.

Lin, J.J., Lehmann, L.W., Bonora, G., Sridharan, R., Vashisht, A.A., Tran, N., Plath, K., Wohlschlegel, J.A., Carey, M. (2011) Mediator coordinates PIC assembly with recruitment of CHD1. Genes Dev 25, 2198-209.


Sridharan, R *., Tchieu, J *., Mason, M.J. *,Yachechko, R., Kuoy, E., Horvath, S., Zhou, Q. and Plath, K. (2009). Role of the murine reprogramming factors in the induction of pluripotency. * equal contribution. Cell, 136(2):364-77.

Gaspar-Maia, A., Alajem, A., Polesso, F., Sridharan, R., Mason, M.J., Heidersbach, A., Ramalho-Santos, J., McManus, M.T., Plath, K., Meshorer, E. and Ramalho-Santos, M. (2009). Chd1 regulates open chromatin and pluripotency of embryonic stem cells. Nature, 460(7257):863-8

Xie, W., Song, C., Sperling, A., Xu, F., Sridharan, R., Conway, A., Plath, K., Clark, A.T. and Grunstein, M. (2009). Histone H3 K56 acetylation marks canonical histone genes and the core transcriptional network for pluripotency in human embryonic stem cells. Mol Cell, 33(4):417-27


Lowry, W. E., Richter, L.,Yachechko, R., Pyle, A. D., Tchieu, J., Sridharan, R., Clark, A. T. and Plath, K.(2008). Generation of human induced pluripotent cells from dermal fibroblasts, PNAS, 105(8): 2883-88.

Sridharan, R., and Plath, K. (2008). Illuminating the black box of reprogramming. Cell Stem Cell, 2(4): 295-97.


Sridharan, R., and Smale, S.T. (2007). Predominant interaction of both Ikaros and Helios with the NuRD complex in immature thymocytes. J Biol Chem, 282(41): 20227-38.

Maherali, N.*, Sridharan, R.*, Xie, W., Utikal, J., Eminli, S., Arnold, K., Stadtfeld, M., Yachechko, R., Tchieu. J., Jaenisch, R., Plath, K.#, and Hochedlinger, K.# (2007). Global epigenetic remodeling in directly reprogrammed fibroblasts.* equal contribution;  # co-corresponding authors. Cell Stem Cell, 1(1): 55-70.


Ramirez-Carrozzi, V. R., Nazarian, A. A., Li, C. C., Gore, S.L., Sridharan, R., Imbalzano, A. N., and   Smale, S. T. (2006). Selective and antagonistic functions of SWI/SNF and Mi-2beta nucleosome remodeling complexes during an inflammatory response. Genes Dev 20(3):282-96.


Su, R. C., Sridharan, R., and Smale, S.T. (2005). Assembly of silent chromatin during thymocyte development. Semin Immunol 17(2):129-40.


Papathanasiou, P., Perkins, A. C., Cobb, B. S., Ferrini, R., Sridharan, R., Hoyne, G. F., Nelms, K. A., Smale, S.T., and Goodnow,C.C. (2003). Widespread failure of hematolymphoid differentiation caused by a recessive niche-filling allele of the Ikaros transcription factor.  Immunity 19(1):131-44.